J5_5J91_004
3D structure
- PDB id
- 5J91 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Wild-type 70S E coli ribosome bound to Tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.96 Å
Loop
- Sequence
- CUGG*CGUG*CUUUC*GAAG*CAAG
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5J91_004 not in the Motif Atlas
- Homologous match to J5_5J7L_001
- Geometric discrepancy: 0.0221
- The information below is about J5_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_92941.1
- Basepair signature
- cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
5J91|1|BA|C|36
5J91|1|BA|U|37
5J91|1|BA|G|38
5J91|1|BA|G|39
*
5J91|1|BA|C|403
5J91|1|BA|G|404
5J91|1|BA|U|405
5J91|1|BA|G|406
*
5J91|1|BA|C|436
5J91|1|BA|U|437
5J91|1|BA|U|438
5J91|1|BA|U|439
5J91|1|BA|C|440
*
5J91|1|BA|G|497
5J91|1|BA|A|498
5J91|1|BA|A|499
5J91|1|BA|G|500
*
5J91|1|BA|C|545
5J91|1|BA|A|546
5J91|1|BA|A|547
5J91|1|BA|G|548
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain BD
- 30S ribosomal protein S4
- Chain BL
- 30S ribosomal protein S12
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: