J5_5JC9_005
3D structure
- PDB id
- 5JC9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.03 Å
Loop
- Sequence
- CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5JC9_005 not in the Motif Atlas
- Homologous match to J5_5J7L_002
- Geometric discrepancy: 0.0304
- The information below is about J5_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_67416.1
- Basepair signature
- cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
5JC9|1|BA|C|36
5JC9|1|BA|U|37
5JC9|1|BA|G|38
5JC9|1|BA|G|39
*
5JC9|1|BA|C|403
5JC9|1|BA|G|404
5JC9|1|BA|U|405
5JC9|1|BA|G|406
*
5JC9|1|BA|C|436
5JC9|1|BA|U|437
5JC9|1|BA|U|438
5JC9|1|BA|U|439
5JC9|1|BA|C|440
5JC9|1|BA|A|441
5JC9|1|BA|G|442
*
5JC9|1|BA|C|492
5JC9|1|BA|A|493
5JC9|1|BA|G|494
5JC9|1|BA|A|495
5JC9|1|BA|A|496
5JC9|1|BA|G|497
5JC9|1|BA|A|498
5JC9|1|BA|A|499
5JC9|1|BA|G|500
*
5JC9|1|BA|C|545
5JC9|1|BA|A|546
5JC9|1|BA|A|547
5JC9|1|BA|G|548
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain BD
- 30S ribosomal protein S4
- Chain BL
- 30S ribosomal protein S12
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DH
- 50S ribosomal protein L9
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