J5_5JC9_013

3D structure

PDB id

5JC9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.03 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5JC9|1|DA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5JC9_013 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0211

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5JC9|1|DA|C|47
5JC9|1|DA|G|48
5JC9|1|DA|A|49
5JC9|1|DA|U|50
5JC9|1|DA|G|51
5JC9|1|DA|A|52
5JC9|1|DA|A|53
5JC9|1|DA|G|54
*
5JC9|1|DA|C|116
5JC9|1|DA|G|117
5JC9|1|DA|A|118
5JC9|1|DA|A|119
5JC9|1|DA|U|120
5JC9|1|DA|G|121
*
5JC9|1|DA|C|130
5JC9|1|DA|A|131
*
5JC9|1|DA|U|148
5JC9|1|DA|A|149
5JC9|1|DA|U|150
*
5JC9|1|DA|A|176
5JC9|1|DA|G|177
5JC9|1|DA|G|178

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L34