J5_5JC9_017
3D structure
- PDB id
- 5JC9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Escherichia coli ribosome with the U1052G mutation in the 16S rRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.03 Å
Loop
- Sequence
- GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GU*GUUUAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 5JC9|1|DA|A|2062, 5JC9|1|DA|A|2448, 5JC9|1|DA|H2U|2449, 5JC9|1|DA|U|2585, 5JC9|1|DA|U|2609
- QA status
- Modified nucleotides: H2U, 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JC9|1|DA|G|2057
5JC9|1|DA|A|2058
5JC9|1|DA|A|2059
5JC9|1|DA|A|2060
5JC9|1|DA|G|2061
5JC9|1|DA|A|2062
5JC9|1|DA|C|2063
5JC9|1|DA|C|2064
*
5JC9|1|DA|G|2446
5JC9|1|DA|G|2447
5JC9|1|DA|A|2448
5JC9|1|DA|H2U|2449
5JC9|1|DA|A|2450
5JC9|1|DA|A|2451
5JC9|1|DA|C|2452
5JC9|1|DA|A|2453
*
5JC9|1|DA|U|2500
5JC9|1|DA|C|2501
5JC9|1|DA|G|2502
5JC9|1|DA|2MA|2503
5JC9|1|DA|PSU|2504
5JC9|1|DA|G|2505
5JC9|1|DA|U|2506
*
5JC9|1|DA|G|2583
5JC9|1|DA|U|2584
5JC9|1|DA|U|2585
5JC9|1|DA|U|2586
5JC9|1|DA|A|2587
5JC9|1|DA|G|2588
*
5JC9|1|DA|C|2606
5JC9|1|DA|G|2607
5JC9|1|DA|G|2608
5JC9|1|DA|U|2609
5JC9|1|DA|C|2610
5JC9|1|DA|C|2611
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D1
- 50S ribosomal protein L32
- Chain DC
- 50S ribosomal protein L2
- Chain DD
- 50S ribosomal protein L3
- Chain DE
- 50S ribosomal protein L4
- Chain DM
- 50S ribosomal protein L15
- Chain DN
- 50S ribosomal protein L16
- Chain DT
- 50S ribosomal protein L22
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