J5_5JPQ_001

3D structure

PDB id

5JPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.3 Å

Loop

Sequence

GCAUG*CGAAUGGC*GAG*CAC*GGCAGC

Length

25 nucleotides

Bulged bases

5JPQ|1|2|A|55, 5JPQ|1|2|A|93, 5JPQ|1|2|A|425

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JPQ|1|2|G|53
5JPQ|1|2|C|54
5JPQ|1|2|A|55
5JPQ|1|2|U|56
5JPQ|1|2|G|57
*
5JPQ|1|2|C|90
5JPQ|1|2|G|91
5JPQ|1|2|A|92
5JPQ|1|2|A|93
5JPQ|1|2|U|94
5JPQ|1|2|G|95
5JPQ|1|2|G|96
5JPQ|1|2|C|97
*
5JPQ|1|2|G|386
5JPQ|1|2|A|387
5JPQ|1|2|G|388
*
5JPQ|1|2|C|409
5JPQ|1|2|A|410
5JPQ|1|2|C|411
*
5JPQ|1|2|G|422
5JPQ|1|2|G|423
5JPQ|1|2|C|424
5JPQ|1|2|A|425
5JPQ|1|2|G|426
5JPQ|1|2|C|427

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 0

eS24

Chain n

WD40 domain proteins

Chain p

eS4

Chain r

eS6

Chain t

eS8