J5_5JTE_002

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5JTE_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.1503

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

5JTE|1|AA|C|36
5JTE|1|AA|U|37
5JTE|1|AA|G|38
5JTE|1|AA|G|39
*
5JTE|1|AA|C|403
5JTE|1|AA|G|404
5JTE|1|AA|U|405
5JTE|1|AA|G|406
*
5JTE|1|AA|C|436
5JTE|1|AA|U|437
5JTE|1|AA|U|438
5JTE|1|AA|U|439
5JTE|1|AA|C|440
5JTE|1|AA|A|441
5JTE|1|AA|G|442
*
5JTE|1|AA|C|492
5JTE|1|AA|A|493
5JTE|1|AA|G|494
5JTE|1|AA|A|495
5JTE|1|AA|A|496
5JTE|1|AA|G|497
5JTE|1|AA|A|498
5JTE|1|AA|A|499
5JTE|1|AA|G|500
*
5JTE|1|AA|C|545
5JTE|1|AA|A|546
5JTE|1|AA|A|547
5JTE|1|AA|G|548

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12