J5_5JTE_010

3D structure

PDB id

5JTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5JTE|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5JTE_010 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0877

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5JTE|1|BA|C|47
5JTE|1|BA|G|48
5JTE|1|BA|A|49
5JTE|1|BA|U|50
5JTE|1|BA|G|51
5JTE|1|BA|A|52
5JTE|1|BA|A|53
5JTE|1|BA|G|54
*
5JTE|1|BA|C|116
5JTE|1|BA|G|117
5JTE|1|BA|A|118
5JTE|1|BA|A|119
5JTE|1|BA|U|120
5JTE|1|BA|G|121
*
5JTE|1|BA|C|130
5JTE|1|BA|A|131
*
5JTE|1|BA|U|148
5JTE|1|BA|A|149
5JTE|1|BA|U|150
*
5JTE|1|BA|A|176
5JTE|1|BA|G|177
5JTE|1|BA|G|178

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34