J5_5JU8_002

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5JU8_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0759

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

5JU8|1|AA|C|36
5JU8|1|AA|U|37
5JU8|1|AA|G|38
5JU8|1|AA|G|39
*
5JU8|1|AA|C|403
5JU8|1|AA|G|404
5JU8|1|AA|U|405
5JU8|1|AA|G|406
*
5JU8|1|AA|C|436
5JU8|1|AA|U|437
5JU8|1|AA|U|438
5JU8|1|AA|U|439
5JU8|1|AA|C|440
5JU8|1|AA|A|441
5JU8|1|AA|G|442
*
5JU8|1|AA|C|492
5JU8|1|AA|A|493
5JU8|1|AA|G|494
5JU8|1|AA|A|495
5JU8|1|AA|A|496
5JU8|1|AA|G|497
5JU8|1|AA|A|498
5JU8|1|AA|A|499
5JU8|1|AA|G|500
*
5JU8|1|AA|C|545
5JU8|1|AA|A|546
5JU8|1|AA|A|547
5JU8|1|AA|G|548

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12