J5_5JU8_008
3D structure
- PDB id
- 5JU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAAAGACC*GGAUAACAG*CCUCGAUGUC*GGUUUAG*CGGUCC
- Length
- 40 nucleotides
- Bulged bases
- 5JU8|1|BA|A|2062, 5JU8|1|BA|A|2448, 5JU8|1|BA|U|2449, 5JU8|1|BA|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JU8|1|BA|G|2057
5JU8|1|BA|A|2058
5JU8|1|BA|A|2059
5JU8|1|BA|A|2060
5JU8|1|BA|G|2061
5JU8|1|BA|A|2062
5JU8|1|BA|C|2063
5JU8|1|BA|C|2064
*
5JU8|1|BA|G|2446
5JU8|1|BA|G|2447
5JU8|1|BA|A|2448
5JU8|1|BA|U|2449
5JU8|1|BA|A|2450
5JU8|1|BA|A|2451
5JU8|1|BA|C|2452
5JU8|1|BA|A|2453
5JU8|1|BA|G|2454
*
5JU8|1|BA|C|2498
5JU8|1|BA|C|2499
5JU8|1|BA|U|2500
5JU8|1|BA|C|2501
5JU8|1|BA|G|2502
5JU8|1|BA|A|2503
5JU8|1|BA|U|2504
5JU8|1|BA|G|2505
5JU8|1|BA|U|2506
5JU8|1|BA|C|2507
*
5JU8|1|BA|G|2582
5JU8|1|BA|G|2583
5JU8|1|BA|U|2584
5JU8|1|BA|U|2585
5JU8|1|BA|U|2586
5JU8|1|BA|A|2587
5JU8|1|BA|G|2588
*
5JU8|1|BA|C|2606
5JU8|1|BA|G|2607
5JU8|1|BA|G|2608
5JU8|1|BA|U|2609
5JU8|1|BA|C|2610
5JU8|1|BA|C|2611
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AX
- Transfer RNA; tRNA
- Chain B0
- 50S ribosomal protein L32
- Chain B5
- ErmBL
- Chain BC
- 50S ribosomal protein L2
- Chain BD
- 50S ribosomal protein L3
- Chain BE
- 50S ribosomal protein L4
- Chain BL
- 50S ribosomal protein L15
- Chain BM
- 50S ribosomal protein L16
- Chain BS
- 50S ribosomal protein L22
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