J5_5JU8_010

3D structure

PDB id

5JU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an ErmBL-stalled ribosome in complex with P-, and E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5JU8|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5JU8_010 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0891

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5JU8|1|BA|C|47
5JU8|1|BA|G|48
5JU8|1|BA|A|49
5JU8|1|BA|U|50
5JU8|1|BA|G|51
5JU8|1|BA|A|52
5JU8|1|BA|A|53
5JU8|1|BA|G|54
*
5JU8|1|BA|C|116
5JU8|1|BA|G|117
5JU8|1|BA|A|118
5JU8|1|BA|A|119
5JU8|1|BA|U|120
5JU8|1|BA|G|121
*
5JU8|1|BA|C|130
5JU8|1|BA|A|131
*
5JU8|1|BA|U|148
5JU8|1|BA|A|149
5JU8|1|BA|U|150
*
5JU8|1|BA|A|176
5JU8|1|BA|G|177
5JU8|1|BA|G|178

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34