J5_5JUU_004

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

5JUU|1|A|U|128, 5JUU|1|A|U|132, 5JUU|1|A|U|133, 5JUU|1|A|U|134, 5JUU|1|A|A|135, 5JUU|1|A|A|140, 5JUU|1|A|U|141, 5JUU|1|A|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUU|1|A|A|124
5JUU|1|A|U|125
5JUU|1|A|A|126
5JUU|1|A|G|127
5JUU|1|A|U|128
5JUU|1|A|U|129
5JUU|1|A|C|130
5JUU|1|A|C|131
5JUU|1|A|U|132
5JUU|1|A|U|133
5JUU|1|A|U|134
5JUU|1|A|A|135
5JUU|1|A|C|136
5JUU|1|A|U|137
5JUU|1|A|A|138
5JUU|1|A|C|139
5JUU|1|A|A|140
5JUU|1|A|U|141
5JUU|1|A|G|142
5JUU|1|A|G|143
*
5JUU|1|A|C|172
5JUU|1|A|A|173
5JUU|1|A|U|174
5JUU|1|A|G|175
5JUU|1|A|C|176
5JUU|1|A|U|177
5JUU|1|A|U|178
5JUU|1|A|A|179
5JUU|1|A|A|180
5JUU|1|A|A|181
5JUU|1|A|A|182
*
5JUU|1|A|U|203
5JUU|1|A|G|204
*
5JUU|1|A|C|263
5JUU|1|A|G|264
5JUU|1|A|A|265
5JUU|1|A|A|266
5JUU|1|A|U|267
*
5JUU|1|A|A|288
5JUU|1|A|U|289
5JUU|1|A|G|290
5JUU|1|A|G|291
5JUU|1|A|U|292
5JUU|1|A|U|293

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain BB

eS4 (yeast S4)

Chain DB

eS6 (yeast S6)

Chain FB

eS8 (yeast S8)