J5_5JUU_008
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GAAAGGUUC*GGUUAGU*ACC*GGUCGUACUGAUAAC*GUC
- Length
- 37 nucleotides
- Bulged bases
- 5JUU|1|B|U|1523, 5JUU|1|B|A|1524, 5JUU|1|B|U|1840, 5JUU|1|B|A|1841
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUU|1|B|G|1488
5JUU|1|B|A|1489
5JUU|1|B|A|1490
5JUU|1|B|A|1491
5JUU|1|B|G|1492
5JUU|1|B|G|1493
5JUU|1|B|U|1494
5JUU|1|B|U|1495
5JUU|1|B|C|1496
*
5JUU|1|B|G|1520
5JUU|1|B|G|1521
5JUU|1|B|U|1522
5JUU|1|B|U|1523
5JUU|1|B|A|1524
5JUU|1|B|G|1525
5JUU|1|B|U|1526
*
5JUU|1|B|A|1613
5JUU|1|B|C|1614
5JUU|1|B|C|1615
*
5JUU|1|B|G|1829
5JUU|1|B|G|1830
5JUU|1|B|U|1831
5JUU|1|B|C|1832
5JUU|1|B|G|1833
5JUU|1|B|U|1834
5JUU|1|B|A|1835
5JUU|1|B|C|1836
5JUU|1|B|U|1837
5JUU|1|B|G|1838
5JUU|1|B|A|1839
5JUU|1|B|U|1840
5JUU|1|B|A|1841
5JUU|1|B|A|1842
5JUU|1|B|C|1843
*
5JUU|1|B|G|1852
5JUU|1|B|U|1853
5JUU|1|B|C|1854
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CA
- uL23 (yeast L25)
- Chain LA
- eL34 (yeast L34)
- Chain MA
- uL29 (yeast L35)
- Chain OA
- eL37 (yeast L37)
- Chain PA
- eL38 (yeast L38)
- Chain QA
- eL39 (yeast L39)
- Chain W
- eL19 (yeast L19)
Coloring options: