J5_5JVH_003
3D structure
- PDB id
- 5JVH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- CGACUU*AGACU*AGUUC*GC*GCGGAUG
- Length
- 25 nucleotides
- Bulged bases
- 5JVH|1|X|U|1268
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JVH|1|X|C|593
5JVH|1|X|G|594
5JVH|1|X|A|595
5JVH|1|X|C|596
5JVH|1|X|U|597
5JVH|1|X|U|598
*
5JVH|1|X|A|681
5JVH|1|X|G|682
5JVH|1|X|A|683
5JVH|1|X|C|684
5JVH|1|X|U|685
*
5JVH|1|X|A|821
5JVH|1|X|G|822
5JVH|1|X|U|823
5JVH|1|X|U|824
5JVH|1|X|C|825
*
5JVH|1|X|G|1209
5JVH|1|X|C|1210
*
5JVH|1|X|G|1263
5JVH|1|X|C|1264
5JVH|1|X|G|1265
5JVH|1|X|G|1266
5JVH|1|X|A|1267
5JVH|1|X|U|1268
5JVH|1|X|G|1269
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4
- Chain I
- 50S ribosomal protein L15
- Chain N
- 50S ribosomal protein L20
- Chain O
- 50S ribosomal protein L21
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