J5_5JVH_005
3D structure
- PDB id
- 5JVH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.58 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 5JVH|1|X|A|2045, 5JVH|1|X|A|2427, 5JVH|1|X|U|2428, 5JVH|1|X|U|2485, 5JVH|1|X|U|2564, 5JVH|1|X|U|2588
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JVH|1|X|A|2040
5JVH|1|X|A|2041
5JVH|1|X|A|2042
5JVH|1|X|A|2043
5JVH|1|X|G|2044
5JVH|1|X|A|2045
5JVH|1|X|C|2046
5JVH|1|X|C|2047
*
5JVH|1|X|G|2425
5JVH|1|X|G|2426
5JVH|1|X|A|2427
5JVH|1|X|U|2428
5JVH|1|X|A|2429
5JVH|1|X|A|2430
5JVH|1|X|C|2431
5JVH|1|X|A|2432
*
5JVH|1|X|U|2479
5JVH|1|X|C|2480
5JVH|1|X|G|2481
5JVH|1|X|A|2482
5JVH|1|X|U|2483
5JVH|1|X|G|2484
5JVH|1|X|U|2485
5JVH|1|X|C|2486
*
5JVH|1|X|G|2561
5JVH|1|X|G|2562
5JVH|1|X|U|2563
5JVH|1|X|U|2564
5JVH|1|X|C|2565
5JVH|1|X|A|2566
5JVH|1|X|G|2567
*
5JVH|1|X|C|2585
5JVH|1|X|G|2586
5JVH|1|X|G|2587
5JVH|1|X|U|2588
5JVH|1|X|C|2589
5JVH|1|X|U|2590
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain A
- 50S ribosomal protein L2
- Chain B
- 50S ribosomal protein L3
- Chain C
- 50S ribosomal protein L4
- Chain I
- 50S ribosomal protein L15
- Chain P
- 50S ribosomal protein L22
- Chain Z
- 50S ribosomal protein L32
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