J5_5KCS_005
3D structure
- PDB id
- 5KCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAAAGACC*GGA(H2U)AACAGG*CA(OMC)CUCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
- Length
- 43 nucleotides
- Bulged bases
- 5KCS|1|1A|A|2062, 5KCS|1|1A|A|2448, 5KCS|1|1A|H2U|2449, 5KCS|1|1A|U|2506, 5KCS|1|1A|U|2585, 5KCS|1|1A|U|2609
- QA status
- Modified nucleotides: H2U, OMC, 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5KCS|1|1A|G|2057
5KCS|1|1A|A|2058
5KCS|1|1A|A|2059
5KCS|1|1A|A|2060
5KCS|1|1A|G|2061
5KCS|1|1A|A|2062
5KCS|1|1A|C|2063
5KCS|1|1A|C|2064
*
5KCS|1|1A|G|2446
5KCS|1|1A|G|2447
5KCS|1|1A|A|2448
5KCS|1|1A|H2U|2449
5KCS|1|1A|A|2450
5KCS|1|1A|A|2451
5KCS|1|1A|C|2452
5KCS|1|1A|A|2453
5KCS|1|1A|G|2454
5KCS|1|1A|G|2455
*
5KCS|1|1A|C|2496
5KCS|1|1A|A|2497
5KCS|1|1A|OMC|2498
5KCS|1|1A|C|2499
5KCS|1|1A|U|2500
5KCS|1|1A|C|2501
5KCS|1|1A|G|2502
5KCS|1|1A|2MA|2503
5KCS|1|1A|PSU|2504
5KCS|1|1A|G|2505
5KCS|1|1A|U|2506
5KCS|1|1A|C|2507
*
5KCS|1|1A|G|2582
5KCS|1|1A|G|2583
5KCS|1|1A|U|2584
5KCS|1|1A|U|2585
5KCS|1|1A|U|2586
5KCS|1|1A|A|2587
5KCS|1|1A|G|2588
*
5KCS|1|1A|C|2606
5KCS|1|1A|G|2607
5KCS|1|1A|G|2608
5KCS|1|1A|U|2609
5KCS|1|1A|C|2610
5KCS|1|1A|C|2611
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L32
- Chain 1D
- 50S ribosomal protein L2
- Chain 1E
- 50S ribosomal protein L3
- Chain 1F
- 50S ribosomal protein L4
- Chain 1P
- 50S ribosomal protein L15
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1W
- 50S ribosomal protein L22
- Chain 1x
- Transfer RNA; tRNA
Coloring options: