J5_5KCS_006

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGGC*GCGUG*CUUUC*GAAG*CAAG

Length

23 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KCS|1|1a|C|36
5KCS|1|1a|U|37
5KCS|1|1a|G|38
5KCS|1|1a|G|39
5KCS|1|1a|C|40
*
5KCS|1|1a|G|402
5KCS|1|1a|C|403
5KCS|1|1a|G|404
5KCS|1|1a|U|405
5KCS|1|1a|G|406
*
5KCS|1|1a|C|436
5KCS|1|1a|U|437
5KCS|1|1a|U|438
5KCS|1|1a|U|439
5KCS|1|1a|C|440
*
5KCS|1|1a|G|497
5KCS|1|1a|A|498
5KCS|1|1a|A|499
5KCS|1|1a|G|500
*
5KCS|1|1a|C|545
5KCS|1|1a|A|546
5KCS|1|1a|A|547
5KCS|1|1a|G|548

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1d

30S ribosomal protein S4

Chain 1l

30S ribosomal protein S12