J5_5KPV_002

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5KPV_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.1061

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

5KPV|1|26|C|36
5KPV|1|26|U|37
5KPV|1|26|G|38
5KPV|1|26|G|39
*
5KPV|1|26|C|403
5KPV|1|26|G|404
5KPV|1|26|U|405
5KPV|1|26|G|406
*
5KPV|1|26|C|436
5KPV|1|26|U|437
5KPV|1|26|U|438
5KPV|1|26|U|439
5KPV|1|26|C|440
5KPV|1|26|A|441
5KPV|1|26|G|442
*
5KPV|1|26|C|492
5KPV|1|26|A|493
5KPV|1|26|G|494
5KPV|1|26|A|495
5KPV|1|26|A|496
5KPV|1|26|G|497
5KPV|1|26|A|498
5KPV|1|26|A|499
5KPV|1|26|G|500
*
5KPV|1|26|C|545
5KPV|1|26|A|546
5KPV|1|26|A|547
5KPV|1|26|G|548

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 16

30S ribosomal protein S12

Chain 8

30S ribosomal protein S4