J5_5KPV_003
3D structure
- PDB id
- 5KPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 5KPV|1|26|A|60, 5KPV|1|26|A|109, 5KPV|1|26|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5KPV_003 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.1106
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5KPV|1|26|C|58
5KPV|1|26|A|59
5KPV|1|26|A|60
5KPV|1|26|G|61
*
5KPV|1|26|C|106
5KPV|1|26|G|107
5KPV|1|26|G|108
5KPV|1|26|A|109
5KPV|1|26|C|110
5KPV|1|26|G|111
5KPV|1|26|G|112
5KPV|1|26|G|113
*
5KPV|1|26|C|314
5KPV|1|26|A|315
5KPV|1|26|C|316
*
5KPV|1|26|G|337
5KPV|1|26|A|338
5KPV|1|26|C|339
*
5KPV|1|26|G|350
5KPV|1|26|G|351
5KPV|1|26|C|352
5KPV|1|26|A|353
5KPV|1|26|G|354
Current chains
- Chain 26
- 16S ribosomal RNA
Nearby chains
- Chain 20
- 30S ribosomal protein S16
- Chain 24
- 30S ribosomal protein S20
- Chain 33
- GTP pyrophosphokinase
- Chain J
- 50S ribosomal protein L14
- Chain O
- 50S ribosomal protein L19
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