J5_5KPW_002

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5KPW_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.1036

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

5KPW|1|26|C|36
5KPW|1|26|U|37
5KPW|1|26|G|38
5KPW|1|26|G|39
*
5KPW|1|26|C|403
5KPW|1|26|G|404
5KPW|1|26|U|405
5KPW|1|26|G|406
*
5KPW|1|26|C|436
5KPW|1|26|U|437
5KPW|1|26|U|438
5KPW|1|26|U|439
5KPW|1|26|C|440
5KPW|1|26|A|441
5KPW|1|26|G|442
*
5KPW|1|26|C|492
5KPW|1|26|A|493
5KPW|1|26|G|494
5KPW|1|26|A|495
5KPW|1|26|A|496
5KPW|1|26|G|497
5KPW|1|26|A|498
5KPW|1|26|A|499
5KPW|1|26|G|500
*
5KPW|1|26|C|545
5KPW|1|26|A|546
5KPW|1|26|A|547
5KPW|1|26|G|548

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 16

30S ribosomal protein S12

Chain 8

30S ribosomal protein S4