J5_5KPW_004

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5KPW|1|27|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5KPW_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0837

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5KPW|1|27|C|47
5KPW|1|27|G|48
5KPW|1|27|A|49
5KPW|1|27|U|50
5KPW|1|27|G|51
5KPW|1|27|A|52
5KPW|1|27|A|53
5KPW|1|27|G|54
*
5KPW|1|27|C|116
5KPW|1|27|G|117
5KPW|1|27|A|118
5KPW|1|27|A|119
5KPW|1|27|U|120
5KPW|1|27|G|121
*
5KPW|1|27|C|130
5KPW|1|27|A|131
*
5KPW|1|27|U|148
5KPW|1|27|A|149
5KPW|1|27|U|150
*
5KPW|1|27|A|176
5KPW|1|27|G|177
5KPW|1|27|G|178

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L34