J5_5KPX_002

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5KPX_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0915

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

5KPX|1|26|C|36
5KPX|1|26|U|37
5KPX|1|26|G|38
5KPX|1|26|G|39
*
5KPX|1|26|C|403
5KPX|1|26|G|404
5KPX|1|26|U|405
5KPX|1|26|G|406
*
5KPX|1|26|C|436
5KPX|1|26|U|437
5KPX|1|26|U|438
5KPX|1|26|U|439
5KPX|1|26|C|440
5KPX|1|26|A|441
5KPX|1|26|G|442
*
5KPX|1|26|C|492
5KPX|1|26|A|493
5KPX|1|26|G|494
5KPX|1|26|A|495
5KPX|1|26|A|496
5KPX|1|26|G|497
5KPX|1|26|A|498
5KPX|1|26|A|499
5KPX|1|26|G|500
*
5KPX|1|26|C|545
5KPX|1|26|A|546
5KPX|1|26|A|547
5KPX|1|26|G|548

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 16

30S ribosomal protein S12

Chain 8

30S ribosomal protein S4