J5_5LI0_001

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAUC*GAAG

Length

24 nucleotides

Bulged bases

5LI0|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LI0|1|A|C|47
5LI0|1|A|G|48
5LI0|1|A|A|49
5LI0|1|A|U|50
5LI0|1|A|G|51
5LI0|1|A|A|52
5LI0|1|A|A|53
5LI0|1|A|G|54
*
5LI0|1|A|C|115
5LI0|1|A|G|116
5LI0|1|A|A|117
5LI0|1|A|A|118
5LI0|1|A|U|119
5LI0|1|A|G|120
*
5LI0|1|A|C|129
5LI0|1|A|A|130
*
5LI0|1|A|U|149
5LI0|1|A|A|150
5LI0|1|A|U|151
5LI0|1|A|C|152
*
5LI0|1|A|G|177
5LI0|1|A|A|178
5LI0|1|A|A|179
5LI0|1|A|G|180

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain W

50S ribosomal protein L23