3D structure

PDB id
5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CUGG*CGUG*CUGUUA*UCAGAAAGC*GCAAG
Length
28 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5LI0|1|a|C|37
5LI0|1|a|U|38
5LI0|1|a|G|39
5LI0|1|a|G|40
*
5LI0|1|a|C|411
5LI0|1|a|G|412
5LI0|1|a|U|413
5LI0|1|a|G|414
*
5LI0|1|a|C|444
5LI0|1|a|U|445
5LI0|1|a|G|446
5LI0|1|a|U|447
5LI0|1|a|U|448
5LI0|1|a|A|449
*
5LI0|1|a|U|501
5LI0|1|a|C|502
5LI0|1|a|A|503
5LI0|1|a|G|504
5LI0|1|a|A|505
5LI0|1|a|A|506
5LI0|1|a|A|507
5LI0|1|a|G|508
5LI0|1|a|C|509
*
5LI0|1|a|G|552
5LI0|1|a|C|553
5LI0|1|a|A|554
5LI0|1|a|A|555
5LI0|1|a|G|556

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain d
30S ribosomal protein S4
Chain l
30S ribosomal protein S12

Coloring options:

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