J5_5LL6_001

3D structure

PDB id

5LL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

5LL6|1|2|A|541, 5LL6|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LL6|1|2|C|31
5LL6|1|2|U|32
5LL6|1|2|U|33
5LL6|1|2|G|34
5LL6|1|2|U|35
*
5LL6|1|2|A|473
5LL6|1|2|A|474
5LL6|1|2|A|475
5LL6|1|2|U|476
5LL6|1|2|A|477
5LL6|1|2|A|478
5LL6|1|2|C|479
*
5LL6|1|2|G|509
5LL6|1|2|G|510
5LL6|1|2|A|511
5LL6|1|2|A|512
5LL6|1|2|U|513
5LL6|1|2|G|514
5LL6|1|2|A|515
5LL6|1|2|G|516
*
5LL6|1|2|C|536
5LL6|1|2|G|537
5LL6|1|2|A|538
5LL6|1|2|G|539
5LL6|1|2|G|540
5LL6|1|2|A|541
5LL6|1|2|A|542
5LL6|1|2|C|543
5LL6|1|2|A|544
5LL6|1|2|A|545
5LL6|1|2|U|546
*
5LL6|1|2|A|592
5LL6|1|2|U|593
5LL6|1|2|A|594
5LL6|1|2|G|595

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain W

40S ribosomal protein S9-A

Chain c

40S ribosomal protein S23-A

Chain g

40S ribosomal protein S30-A