Loop J5_5LL6

3D structure

PDB id: 5LL6 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å

Loop

Sequence: AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU
Length: 41 nucleotides
Bulged bases: 5LL6|1|2|A|126, 5LL6|1|2|U|128, 5LL6|1|2|C|130, 5LL6|1|2|C|131, 5LL6|1|2|U|132, 5LL6|1|2|U|133, 5LL6|1|2|U|134, 5LL6|1|2|A|135, 5LL6|1|2|C|136, 5LL6|1|2|U|137, 5LL6|1|2|A|140, 5LL6|1|2|U|141, 5LL6|1|2|U|178
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5LL6|1|2|A|124
5LL6|1|2|U|125
5LL6|1|2|A|126
5LL6|1|2|G|127
5LL6|1|2|U|128
5LL6|1|2|U|129
5LL6|1|2|C|130
5LL6|1|2|C|131
5LL6|1|2|U|132
5LL6|1|2|U|133
5LL6|1|2|U|134
5LL6|1|2|A|135
5LL6|1|2|C|136
5LL6|1|2|U|137
5LL6|1|2|A|138
5LL6|1|2|C|139
5LL6|1|2|A|140
5LL6|1|2|U|141
5LL6|1|2|G|142
5LL6|1|2|G|143
*
5LL6|1|2|C|172
5LL6|1|2|A|173
5LL6|1|2|U|174
5LL6|1|2|G|175
5LL6|1|2|C|176
5LL6|1|2|U|177
5LL6|1|2|U|178
5LL6|1|2|A|179
5LL6|1|2|A|180
5LL6|1|2|A|181
5LL6|1|2|A|182
*
5LL6|1|2|U|203
5LL6|1|2|G|204
*
5LL6|1|2|C|263
5LL6|1|2|G|264
5LL6|1|2|A|265
*
5LL6|1|2|U|289
5LL6|1|2|G|290
5LL6|1|2|G|291
5LL6|1|2|U|292
5LL6|1|2|U|293

Current chains

Chain 2: 18S ribosomal RNA

Nearby chains

Chain S: 40S ribosomal protein S4-A
Chain T: 40S ribosomal protein S6-A
Chain V: 40S ribosomal protein S8-A

J5_5LL6_003