J5_5LL6_004

3D structure

PDB id

5LL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACUUUG*UUUCCUUCUGG*CAGGACUUU*AUAGAAUAGG*UGAU

Length

40 nucleotides

Bulged bases

5LL6|1|2|U|694, 5LL6|1|2|C|696, 5LL6|1|2|C|697, 5LL6|1|2|U|813, 5LL6|1|2|G|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LL6|1|2|A|636
5LL6|1|2|C|637
5LL6|1|2|U|638
5LL6|1|2|U|639
5LL6|1|2|U|640
5LL6|1|2|G|641
*
5LL6|1|2|U|693
5LL6|1|2|U|694
5LL6|1|2|U|695
5LL6|1|2|C|696
5LL6|1|2|C|697
5LL6|1|2|U|698
5LL6|1|2|U|699
5LL6|1|2|C|700
5LL6|1|2|U|701
5LL6|1|2|G|702
5LL6|1|2|G|703
*
5LL6|1|2|C|736
5LL6|1|2|A|737
5LL6|1|2|G|738
5LL6|1|2|G|739
5LL6|1|2|A|740
5LL6|1|2|C|741
5LL6|1|2|U|742
5LL6|1|2|U|743
5LL6|1|2|U|744
*
5LL6|1|2|A|807
5LL6|1|2|U|808
5LL6|1|2|A|809
5LL6|1|2|G|810
5LL6|1|2|A|811
5LL6|1|2|A|812
5LL6|1|2|U|813
5LL6|1|2|A|814
5LL6|1|2|G|815
5LL6|1|2|G|816
*
5LL6|1|2|U|857
5LL6|1|2|G|858
5LL6|1|2|A|859
5LL6|1|2|U|860

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A

Chain U

40S ribosomal protein S7-A

Chain X

40S ribosomal protein S11-A

Chain Y

40S ribosomal protein S13

Chain b

40S ribosomal protein S22-A