J5_5LMT_002

3D structure

PDB id

5LMT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.15 Å

Loop

Sequence

GCAAG*CGGACGGG*CAG*CAC*GGCAGC

Length

25 nucleotides

Bulged bases

5LMT|1|A|A|109, 5LMT|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LMT|1|A|G|57
5LMT|1|A|C|58
5LMT|1|A|A|59
5LMT|1|A|A|60
5LMT|1|A|G|61
*
5LMT|1|A|C|106
5LMT|1|A|G|107
5LMT|1|A|G|108
5LMT|1|A|A|109
5LMT|1|A|C|110
5LMT|1|A|G|111
5LMT|1|A|G|112
5LMT|1|A|G|113
*
5LMT|1|A|C|314
5LMT|1|A|A|315
5LMT|1|A|G|316
*
5LMT|1|A|C|337
5LMT|1|A|A|338
5LMT|1|A|C|339
*
5LMT|1|A|G|350
5LMT|1|A|G|351
5LMT|1|A|C|352
5LMT|1|A|A|353
5LMT|1|A|G|354
5LMT|1|A|C|355

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20