J5_5LYB_007

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

5LYB|1|2|A|538, 5LYB|1|2|A|541, 5LYB|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LYB|1|2|C|31
5LYB|1|2|U|32
5LYB|1|2|U|33
5LYB|1|2|G|34
5LYB|1|2|U|35
*
5LYB|1|2|A|473
5LYB|1|2|A|474
5LYB|1|2|A|475
5LYB|1|2|U|476
5LYB|1|2|A|477
5LYB|1|2|A|478
5LYB|1|2|C|479
*
5LYB|1|2|G|509
5LYB|1|2|G|510
5LYB|1|2|A|511
5LYB|1|2|A|512
5LYB|1|2|U|513
5LYB|1|2|G|514
5LYB|1|2|A|515
5LYB|1|2|G|516
*
5LYB|1|2|C|536
5LYB|1|2|G|537
5LYB|1|2|A|538
5LYB|1|2|G|539
5LYB|1|2|G|540
5LYB|1|2|A|541
5LYB|1|2|A|542
5LYB|1|2|C|543
5LYB|1|2|A|544
5LYB|1|2|A|545
5LYB|1|2|U|546
*
5LYB|1|2|A|592
5LYB|1|2|U|593
5LYB|1|2|A|594
5LYB|1|2|G|595

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain E0

40S ribosomal protein S30-A

Chain S9

40S ribosomal protein S9-A