J5_5LYB_009

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU

Length

41 nucleotides

Bulged bases

5LYB|1|2|U|128, 5LYB|1|2|U|132, 5LYB|1|2|C|136, 5LYB|1|2|U|137, 5LYB|1|2|A|140, 5LYB|1|2|U|141, 5LYB|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LYB|1|2|A|124
5LYB|1|2|U|125
5LYB|1|2|A|126
5LYB|1|2|G|127
5LYB|1|2|U|128
5LYB|1|2|U|129
5LYB|1|2|C|130
5LYB|1|2|C|131
5LYB|1|2|U|132
5LYB|1|2|U|133
5LYB|1|2|U|134
5LYB|1|2|A|135
5LYB|1|2|C|136
5LYB|1|2|U|137
5LYB|1|2|A|138
5LYB|1|2|C|139
5LYB|1|2|A|140
5LYB|1|2|U|141
5LYB|1|2|G|142
5LYB|1|2|G|143
*
5LYB|1|2|C|172
5LYB|1|2|A|173
5LYB|1|2|U|174
5LYB|1|2|G|175
5LYB|1|2|C|176
5LYB|1|2|U|177
5LYB|1|2|U|178
5LYB|1|2|A|179
5LYB|1|2|A|180
5LYB|1|2|A|181
5LYB|1|2|A|182
*
5LYB|1|2|U|203
5LYB|1|2|G|204
*
5LYB|1|2|C|263
5LYB|1|2|G|264
5LYB|1|2|A|265
*
5LYB|1|2|U|289
5LYB|1|2|G|290
5LYB|1|2|G|291
5LYB|1|2|U|292
5LYB|1|2|U|293

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A