J5_5LZC_001

3D structure

PDB id

5LZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5LZC|1|A|U|50

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5LZC_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1041

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5LZC|1|A|C|47
5LZC|1|A|G|48
5LZC|1|A|A|49
5LZC|1|A|U|50
5LZC|1|A|G|51
5LZC|1|A|A|52
5LZC|1|A|A|53
5LZC|1|A|G|54
*
5LZC|1|A|C|116
5LZC|1|A|G|117
5LZC|1|A|A|118
5LZC|1|A|A|119
5LZC|1|A|U|120
5LZC|1|A|G|121
*
5LZC|1|A|C|130
5LZC|1|A|A|131
*
5LZC|1|A|U|148
5LZC|1|A|A|149
5LZC|1|A|U|150
*
5LZC|1|A|A|176
5LZC|1|A|G|177
5LZC|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34