3D structure

PDB id
5LZC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.8 Å

Loop

Sequence
GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
Length
37 nucleotides
Bulged bases
5LZC|1|A|A|2062, 5LZC|1|A|A|2448, 5LZC|1|A|H2U|2449, 5LZC|1|A|G|2505, 5LZC|1|A|U|2506, 5LZC|1|A|U|2609, 5LZC|1|A|C|2610
QA status
Modified nucleotides: H2U, 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5LZC|1|A|G|2057
5LZC|1|A|A|2058
5LZC|1|A|A|2059
5LZC|1|A|A|2060
5LZC|1|A|G|2061
5LZC|1|A|A|2062
5LZC|1|A|C|2063
5LZC|1|A|C|2064
*
5LZC|1|A|G|2446
5LZC|1|A|G|2447
5LZC|1|A|A|2448
5LZC|1|A|H2U|2449
5LZC|1|A|A|2450
5LZC|1|A|A|2451
5LZC|1|A|C|2452
5LZC|1|A|A|2453
*
5LZC|1|A|U|2500
5LZC|1|A|C|2501
5LZC|1|A|G|2502
5LZC|1|A|2MA|2503
5LZC|1|A|PSU|2504
5LZC|1|A|G|2505
5LZC|1|A|U|2506
5LZC|1|A|C|2507
*
5LZC|1|A|G|2582
5LZC|1|A|G|2583
5LZC|1|A|U|2584
5LZC|1|A|U|2585
5LZC|1|A|U|2586
5LZC|1|A|A|2587
5LZC|1|A|G|2588
*
5LZC|1|A|C|2606
5LZC|1|A|G|2607
5LZC|1|A|G|2608
5LZC|1|A|U|2609
5LZC|1|A|C|2610
5LZC|1|A|C|2611

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain C
50S ribosomal protein L2
Chain D
50S ribosomal protein L3
Chain E
50S ribosomal protein L4
Chain L
50S ribosomal protein L15
Chain M
50S ribosomal protein L16
Chain S
50S ribosomal protein L22
Chain v
Transfer RNA; tRNA

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