J5_5LZC_010

3D structure

PDB id

5LZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CGUC*GG*UUG*CGGG*UG

Length

15 nucleotides

Bulged bases

5LZC|1|y|G|8, 5LZC|1|y|U|9, 5LZC|1|y|U|45, 5LZC|1|y|G|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZC|1|y|C|7
5LZC|1|y|G|8
5LZC|1|y|U|9
5LZC|1|y|C|10
*
5LZC|1|y|G|25
5LZC|1|y|G|26
*
5LZC|1|y|U|44
5LZC|1|y|U|45
5LZC|1|y|G|46
*
5LZC|1|y|C|47|||P
5LZC|1|y|G|47|||Q
5LZC|1|y|G|48
5LZC|1|y|G|49
*
5LZC|1|y|U|65
5LZC|1|y|G|66

Current chains

Chain y

Sec-tRNASec

Nearby chains

Chain l

30S ribosomal protein S12

Chain z

Selenocysteine-specific elongation factor