J5_5LZS_009

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

5LZS|1|9|G|126, 5LZS|1|9|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZS|1|9|G|123
5LZS|1|9|U|124
5LZS|1|9|C|125
5LZS|1|9|G|126
5LZS|1|9|C|127
5LZS|1|9|U|128
5LZS|1|9|C|129
*
5LZS|1|9|G|183
5LZS|1|9|G|184
5LZS|1|9|G|185
*
5LZS|1|9|U|214
5LZS|1|9|G|215
*
5LZS|1|9|C|310
5LZS|1|9|C|311
5LZS|1|9|G|312
*
5LZS|1|9|C|337
5LZS|1|9|G|338
5LZS|1|9|A|339
5LZS|1|9|C|340
5LZS|1|9|C|341

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain GG

40S ribosomal protein S6

Chain II

40S ribosomal protein S8