J5_5LZU_009

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

5LZU|1|9|G|126, 5LZU|1|9|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZU|1|9|G|123
5LZU|1|9|U|124
5LZU|1|9|C|125
5LZU|1|9|G|126
5LZU|1|9|C|127
5LZU|1|9|U|128
5LZU|1|9|C|129
*
5LZU|1|9|G|183
5LZU|1|9|G|184
5LZU|1|9|G|185
*
5LZU|1|9|U|214
5LZU|1|9|G|215
*
5LZU|1|9|C|310
5LZU|1|9|C|311
5LZU|1|9|G|312
*
5LZU|1|9|C|337
5LZU|1|9|G|338
5LZU|1|9|A|339
5LZU|1|9|C|340
5LZU|1|9|C|341

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain GG

40S ribosomal protein S6

Chain II

40S ribosomal protein S8