Loop J5_5LZW

3D structure

PDB id: 5LZW (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.53 Å

Loop

Sequence: CC*GAGGGAGC*GUGCGCCGCGCUCUCC*GCCGG*CCACGCGUCCCCCGCGAGCGCACGGGG
Length: 58 nucleotides
Bulged bases: 5LZW|1|5|G|959, 5LZW|1|5|U|971, 5LZW|1|5|C|972, 5LZW|1|5|C|1237, 5LZW|1|5|G|1271, 5LZW|1|5|C|1272, 5LZW|1|5|C|1280
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5LZW|1|5|C|712
5LZW|1|5|C|713
*
5LZW|1|5|G|955
5LZW|1|5|A|956
5LZW|1|5|G|957
5LZW|1|5|G|958
5LZW|1|5|G|959
5LZW|1|5|A|960
5LZW|1|5|G|961
5LZW|1|5|C|962
*
5LZW|1|5|G|970
5LZW|1|5|U|971
5LZW|1|5|G|971|||A
5LZW|1|5|C|972
5LZW|1|5|G|973
5LZW|1|5|C|974
5LZW|1|5|C|975
5LZW|1|5|G|976
5LZW|1|5|C|977
5LZW|1|5|G|978
5LZW|1|5|C|979
5LZW|1|5|U|980
5LZW|1|5|C|981
5LZW|1|5|U|982
5LZW|1|5|C|983
5LZW|1|5|C|984
*
5LZW|1|5|G|1070
5LZW|1|5|C|1071
5LZW|1|5|C|1072
5LZW|1|5|G|1073
5LZW|1|5|G|1074
*
5LZW|1|5|C|1236
5LZW|1|5|C|1237
5LZW|1|5|A|1238
5LZW|1|5|C|1239
5LZW|1|5|G|1244
5LZW|1|5|C|1245
5LZW|1|5|G|1246
5LZW|1|5|U|1247
5LZW|1|5|C|1248
5LZW|1|5|C|1249
5LZW|1|5|C|1250
5LZW|1|5|C|1251
5LZW|1|5|C|1252
5LZW|1|5|G|1271
5LZW|1|5|C|1272
5LZW|1|5|G|1273
5LZW|1|5|A|1274
5LZW|1|5|G|1275
5LZW|1|5|C|1276
5LZW|1|5|G|1277
5LZW|1|5|C|1278
5LZW|1|5|A|1279
5LZW|1|5|C|1280
5LZW|1|5|G|1281
5LZW|1|5|G|1282
5LZW|1|5|G|1283
5LZW|1|5|G|1284

Current chains

Chain 5: 28S ribosomal RNA

Nearby chains

Chain C: uL4
Chain E: eL6
Chain F: uL30
Chain b: eL29
Chain e: eL32

J5_5LZW_002