J5_5LZW_010

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

5LZW|1|9|G|126, 5LZW|1|9|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZW|1|9|G|123
5LZW|1|9|U|124
5LZW|1|9|C|125
5LZW|1|9|G|126
5LZW|1|9|C|127
5LZW|1|9|U|128
5LZW|1|9|C|129
*
5LZW|1|9|G|183
5LZW|1|9|G|184
5LZW|1|9|G|185
*
5LZW|1|9|U|214
5LZW|1|9|G|215
*
5LZW|1|9|C|310
5LZW|1|9|C|311
5LZW|1|9|G|312
*
5LZW|1|9|C|337
5LZW|1|9|G|338
5LZW|1|9|A|339
5LZW|1|9|C|340
5LZW|1|9|C|341

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain GG

eS6

Chain II

eS8