J5_5LZX_010

3D structure

PDB id

5LZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

5LZX|1|9|G|126, 5LZX|1|9|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZX|1|9|G|123
5LZX|1|9|U|124
5LZX|1|9|C|125
5LZX|1|9|G|126
5LZX|1|9|C|127
5LZX|1|9|U|128
5LZX|1|9|C|129
*
5LZX|1|9|G|183
5LZX|1|9|G|184
5LZX|1|9|G|185
*
5LZX|1|9|U|214
5LZX|1|9|G|215
*
5LZX|1|9|C|310
5LZX|1|9|C|311
5LZX|1|9|G|312
*
5LZX|1|9|C|337
5LZX|1|9|G|338
5LZX|1|9|A|339
5LZX|1|9|C|340
5LZX|1|9|C|341

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain GG

40S ribosomal protein S6

Chain II

eS8