J5_5LZX_011
3D structure
- PDB id
- 5LZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.67 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 5LZX|1|5|A|4394, 5LZX|1|5|G|4451, 5LZX|1|5|U|4555, 5LZX|1|5|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5LZX|1|5|A|3903
5LZX|1|5|G|3904
5LZX|1|5|A|3905
5LZX|1|5|A|3906
5LZX|1|5|G|3907
5LZX|1|5|A|3908
5LZX|1|5|C|3909
5LZX|1|5|C|3910
*
5LZX|1|5|G|4392
5LZX|1|5|G|4393
5LZX|1|5|A|4394
5LZX|1|5|U|4395
5LZX|1|5|A|4396
5LZX|1|5|A|4397
5LZX|1|5|C|4398
5LZX|1|5|U|4399
5LZX|1|5|G|4400
*
5LZX|1|5|C|4444
5LZX|1|5|U|4445
5LZX|1|5|U|4446
5LZX|1|5|C|4447
5LZX|1|5|G|4448
5LZX|1|5|A|4449
5LZX|1|5|U|4450
5LZX|1|5|G|4451
5LZX|1|5|U|4452
5LZX|1|5|C|4453
*
5LZX|1|5|G|4528
5LZX|1|5|G|4529
5LZX|1|5|U|4530
5LZX|1|5|U|4531
5LZX|1|5|U|4532
5LZX|1|5|A|4533
5LZX|1|5|G|4534
*
5LZX|1|5|U|4552
5LZX|1|5|A|4553
5LZX|1|5|G|4554
5LZX|1|5|U|4555
5LZX|1|5|U|4556
5LZX|1|5|U|4557
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 1
- Nascent chain
- Chain 2
- Transfer RNA; tRNA
- Chain A
- uL2
- Chain B
- Ul3
- Chain C
- uL4
- Chain a
- uL15
- Chain b
- eL29
Coloring options: