J5_5MDV_001
3D structure
- PDB id
- 5MDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.97 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CA*UAU*AGG
- Length
- 22 nucleotides
- Bulged bases
- 5MDV|1|1|U|50
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5MDV_001 not in the Motif Atlas
- Homologous match to J5_5J7L_013
- Geometric discrepancy: 0.0429
- The information below is about J5_5J7L_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
5MDV|1|1|C|47
5MDV|1|1|G|48
5MDV|1|1|A|49
5MDV|1|1|U|50
5MDV|1|1|G|51
5MDV|1|1|A|52
5MDV|1|1|A|53
5MDV|1|1|G|54
*
5MDV|1|1|C|116
5MDV|1|1|G|117
5MDV|1|1|A|118
5MDV|1|1|A|119
5MDV|1|1|U|120
5MDV|1|1|G|121
*
5MDV|1|1|C|130
5MDV|1|1|A|131
*
5MDV|1|1|U|148
5MDV|1|1|A|149
5MDV|1|1|U|150
*
5MDV|1|1|A|176
5MDV|1|1|G|177
5MDV|1|1|G|178
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain d
- 50S ribosomal protein L34
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