J5_5MDV_007

3D structure

PDB id

5MDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

5MDV|1|2|U|439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5MDV_007 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.094

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

5MDV|1|2|C|36
5MDV|1|2|U|37
5MDV|1|2|G|38
5MDV|1|2|G|39
*
5MDV|1|2|C|403
5MDV|1|2|G|404
5MDV|1|2|U|405
5MDV|1|2|G|406
*
5MDV|1|2|C|436
5MDV|1|2|U|437
5MDV|1|2|U|438
5MDV|1|2|U|439
5MDV|1|2|C|440
*
5MDV|1|2|G|497
5MDV|1|2|A|498
5MDV|1|2|A|499
5MDV|1|2|G|500
*
5MDV|1|2|C|545
5MDV|1|2|A|546
5MDV|1|2|A|547
5MDV|1|2|G|548

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4

Chain q

30S ribosomal protein S12