J5_5MDW_001

3D structure

PDB id

5MDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5MDW|1|1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5MDW_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0355

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5MDW|1|1|C|47
5MDW|1|1|G|48
5MDW|1|1|A|49
5MDW|1|1|U|50
5MDW|1|1|G|51
5MDW|1|1|A|52
5MDW|1|1|A|53
5MDW|1|1|G|54
*
5MDW|1|1|C|116
5MDW|1|1|G|117
5MDW|1|1|A|118
5MDW|1|1|A|119
5MDW|1|1|U|120
5MDW|1|1|G|121
*
5MDW|1|1|C|130
5MDW|1|1|A|131
*
5MDW|1|1|U|148
5MDW|1|1|A|149
5MDW|1|1|U|150
*
5MDW|1|1|A|176
5MDW|1|1|G|177
5MDW|1|1|G|178

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34