J5_5MDW_007

3D structure

PDB id

5MDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

5MDW|1|2|U|439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5MDW_007 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.1128

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

5MDW|1|2|C|36
5MDW|1|2|U|37
5MDW|1|2|G|38
5MDW|1|2|G|39
*
5MDW|1|2|C|403
5MDW|1|2|G|404
5MDW|1|2|U|405
5MDW|1|2|G|406
*
5MDW|1|2|C|436
5MDW|1|2|U|437
5MDW|1|2|U|438
5MDW|1|2|U|439
5MDW|1|2|C|440
*
5MDW|1|2|G|497
5MDW|1|2|A|498
5MDW|1|2|A|499
5MDW|1|2|G|500
*
5MDW|1|2|C|545
5MDW|1|2|A|546
5MDW|1|2|A|547
5MDW|1|2|G|548

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4

Chain q

30S ribosomal protein S12