J5_5MDW_009
3D structure
- PDB id
- 5MDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.06 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 5MDW|1|2|A|109, 5MDW|1|2|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5MDW_009 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.0669
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5MDW|1|2|C|58
5MDW|1|2|A|59
5MDW|1|2|A|60
5MDW|1|2|G|61
*
5MDW|1|2|C|106
5MDW|1|2|G|107
5MDW|1|2|G|108
5MDW|1|2|A|109
5MDW|1|2|C|110
5MDW|1|2|G|111
5MDW|1|2|G|112
5MDW|1|2|G|113
*
5MDW|1|2|C|314
5MDW|1|2|A|315
5MDW|1|2|C|316
*
5MDW|1|2|G|337
5MDW|1|2|A|338
5MDW|1|2|C|339
*
5MDW|1|2|G|350
5MDW|1|2|G|351
5MDW|1|2|C|352
5MDW|1|2|A|353
5MDW|1|2|G|354
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain K
- 50S ribosomal protein L14
- Chain P
- 50S ribosomal protein L19
- Chain u
- 30S ribosomal protein S16
- Chain y
- 30S ribosomal protein S20
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