J5_5MDZ_005
3D structure
- PDB id
- 5MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome (empty A site)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 5MDZ|1|1|A|2062, 5MDZ|1|1|A|2448, 5MDZ|1|1|U|2506, 5MDZ|1|1|U|2609
- QA status
- Modified nucleotides: 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5MDZ|1|1|G|2057
5MDZ|1|1|A|2058
5MDZ|1|1|A|2059
5MDZ|1|1|A|2060
5MDZ|1|1|G|2061
5MDZ|1|1|A|2062
5MDZ|1|1|C|2063
5MDZ|1|1|C|2064
*
5MDZ|1|1|G|2446
5MDZ|1|1|G|2447
5MDZ|1|1|A|2448
5MDZ|1|1|U|2449
5MDZ|1|1|A|2450
5MDZ|1|1|A|2451
5MDZ|1|1|C|2452
5MDZ|1|1|A|2453
*
5MDZ|1|1|U|2500
5MDZ|1|1|C|2501
5MDZ|1|1|G|2502
5MDZ|1|1|2MA|2503
5MDZ|1|1|PSU|2504
5MDZ|1|1|G|2505
5MDZ|1|1|U|2506
5MDZ|1|1|C|2507
*
5MDZ|1|1|G|2582
5MDZ|1|1|G|2583
5MDZ|1|1|U|2584
5MDZ|1|1|U|2585
5MDZ|1|1|U|2586
5MDZ|1|1|A|2587
5MDZ|1|1|G|2588
*
5MDZ|1|1|C|2606
5MDZ|1|1|G|2607
5MDZ|1|1|G|2608
5MDZ|1|1|U|2609
5MDZ|1|1|C|2610
5MDZ|1|1|C|2611
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain B
- 50S ribosomal protein L2
- Chain C
- 50S ribosomal protein L3
- Chain D
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
- Chain M
- 50S ribosomal protein L16
- Chain S
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
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