J5_5MGP_001

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

5MGP|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5MGP_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0798

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5MGP|1|A|C|47
5MGP|1|A|G|48
5MGP|1|A|A|49
5MGP|1|A|U|50
5MGP|1|A|G|51
5MGP|1|A|A|52
5MGP|1|A|A|53
5MGP|1|A|G|54
*
5MGP|1|A|C|116
5MGP|1|A|G|117
5MGP|1|A|A|118
5MGP|1|A|A|119
5MGP|1|A|U|120
5MGP|1|A|G|121
*
5MGP|1|A|C|130
5MGP|1|A|A|131
*
5MGP|1|A|U|148
5MGP|1|A|A|149
5MGP|1|A|U|150
*
5MGP|1|A|A|176
5MGP|1|A|G|177
5MGP|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34