3D structure

PDB id
5MGP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
Length
28 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_5MGP_007 not in the Motif Atlas
Homologous match to J5_5J7L_002
Geometric discrepancy: 0.0717
The information below is about J5_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_67416.1
Basepair signature
cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
Number of instances in this motif group
1

Unit IDs

5MGP|1|a|C|36
5MGP|1|a|U|37
5MGP|1|a|G|38
5MGP|1|a|G|39
*
5MGP|1|a|C|403
5MGP|1|a|G|404
5MGP|1|a|U|405
5MGP|1|a|G|406
*
5MGP|1|a|C|436
5MGP|1|a|U|437
5MGP|1|a|U|438
5MGP|1|a|U|439
5MGP|1|a|C|440
5MGP|1|a|A|441
5MGP|1|a|G|442
*
5MGP|1|a|C|492
5MGP|1|a|A|493
5MGP|1|a|G|494
5MGP|1|a|A|495
5MGP|1|a|A|496
5MGP|1|a|G|497
5MGP|1|a|A|498
5MGP|1|a|A|499
5MGP|1|a|G|500
*
5MGP|1|a|C|545
5MGP|1|a|A|546
5MGP|1|a|A|547
5MGP|1|a|G|548

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain d
30S ribosomal protein S4
Chain l
30S ribosomal protein S12

Coloring options:


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