J5_5MGP_008
3D structure
- PDB id
- 5MGP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 5MGP|1|a|A|109, 5MGP|1|a|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5MGP_008 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.1026
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5MGP|1|a|C|58
5MGP|1|a|A|59
5MGP|1|a|A|60
5MGP|1|a|G|61
*
5MGP|1|a|C|106
5MGP|1|a|G|107
5MGP|1|a|G|108
5MGP|1|a|A|109
5MGP|1|a|C|110
5MGP|1|a|G|111
5MGP|1|a|G|112
5MGP|1|a|G|113
*
5MGP|1|a|C|314
5MGP|1|a|A|315
5MGP|1|a|C|316
*
5MGP|1|a|G|337
5MGP|1|a|A|338
5MGP|1|a|C|339
*
5MGP|1|a|G|350
5MGP|1|a|G|351
5MGP|1|a|C|352
5MGP|1|a|A|353
5MGP|1|a|G|354
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain K
- 50S ribosomal protein L14
- Chain P
- 50S ribosomal protein L19
- Chain p
- 30S ribosomal protein S16
- Chain t
- 30S ribosomal protein S20
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