J5_5MLC_003
3D structure
- PDB id
- 5MLC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 5MLC|1|A|U|1276
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5MLC_003 not in the Motif Atlas
- Homologous match to J5_4WF9_004
- Geometric discrepancy: 0.1032
- The information below is about J5_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5MLC|1|A|C|594
5MLC|1|A|G|595
5MLC|1|A|A|596
5MLC|1|A|C|597
5MLC|1|A|U|598
5MLC|1|A|C|599
*
5MLC|1|A|G|679
5MLC|1|A|G|680
5MLC|1|A|A|681
5MLC|1|A|C|682
*
5MLC|1|A|G|820
5MLC|1|A|U|821
5MLC|1|A|U|822
5MLC|1|A|C|823
*
5MLC|1|A|G|1216
5MLC|1|A|C|1217
*
5MLC|1|A|G|1271
5MLC|1|A|A|1272
5MLC|1|A|G|1273
5MLC|1|A|A|1274
5MLC|1|A|A|1275
5MLC|1|A|U|1276
5MLC|1|A|G|1277
Current chains
- Chain A
- 23S ribosomal RNA, chloroplastic
Nearby chains
- Chain 5
- 50S ribosomal protein L35, chloroplastic
- Chain F
- 50S ribosomal protein L4, chloroplastic
- Chain N
- 50S ribosomal protein L15, chloroplastic
- Chain S
- 50S ribosomal protein L20, chloroplastic
- Chain T
- 50S ribosomal protein L21, chloroplastic
Coloring options: