J5_5MRF_002
3D structure
- PDB id
- 5MRF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast mitochondrial ribosome - Class C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.97 Å
Loop
- Sequence
- CAAGUA*UGAC*GUUU*AC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 5MRF|1|A|U|1288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5MRF_002 not in the Motif Atlas
- Homologous match to J5_4WF9_004
- Geometric discrepancy: 0.1383
- The information below is about J5_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5MRF|1|A|C|483
5MRF|1|A|A|484
5MRF|1|A|A|485
5MRF|1|A|G|486
5MRF|1|A|U|487
5MRF|1|A|A|488
*
5MRF|1|A|U|577
5MRF|1|A|G|578
5MRF|1|A|A|579
5MRF|1|A|C|580
*
5MRF|1|A|G|700
5MRF|1|A|U|701
5MRF|1|A|U|702
5MRF|1|A|U|703
*
5MRF|1|A|A|1229
5MRF|1|A|C|1230
*
5MRF|1|A|G|1283
5MRF|1|A|A|1284
5MRF|1|A|G|1285
5MRF|1|A|A|1286
5MRF|1|A|A|1287
5MRF|1|A|U|1288
5MRF|1|A|G|1289
Current chains
- Chain A
- 21S ribosomal RNA
Nearby chains
- Chain 4
- mL43
- Chain D
- uL4m
- Chain J
- uL15m
- Chain N
- bL21m
Coloring options: