J5_5MRF_005

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

CGAA*UGUAAAC*GU*AU*ACAG

Length

19 nucleotides

Bulged bases

5MRF|1|aa|A|67, 5MRF|1|aa|A|109, 5MRF|1|aa|C|356, 5MRF|1|aa|A|357

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MRF|1|aa|C|65
5MRF|1|aa|G|66
5MRF|1|aa|A|67
5MRF|1|aa|A|68
*
5MRF|1|aa|U|106
5MRF|1|aa|G|107
5MRF|1|aa|U|108
5MRF|1|aa|A|109
5MRF|1|aa|A|110
5MRF|1|aa|A|111
5MRF|1|aa|C|112
*
5MRF|1|aa|G|321
5MRF|1|aa|U|322
*
5MRF|1|aa|A|342
5MRF|1|aa|U|343
*
5MRF|1|aa|A|355
5MRF|1|aa|C|356
5MRF|1|aa|A|357
5MRF|1|aa|G|358

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain 22

mS41

Chain I

uL14m

Chain M

bL19m

Chain PP

bS16m